Orca
Orca
Orca is available on the Inula
cluster
It is available in the following version:
Name: Orca
Version: 3.0.3
Platform: x86_64
Category: Applications/Scientific
URL https://orcaforum.cec.mpg.de/
Provides: orca
Below is how to load the module into the software:
Module loading reference
Sample SLURM runtime script:
#!/bin/bash #SBATCH --nodes=1 #SBATCH --ntasks-per-node=4 #SBATCH --mem=4gb #SBATCH --time=01:00:00 # Set paths or load appropriate modules module load orca # Set the $TMPDIR variable export TMPDIR=$HOME/grant_$SLURM_JOB_ACCOUNT/scratch/$USER/$SLURM_JOB_ID # We set application variables export SCR=${TMPDIR} # We set auxiliary variables INPUT_DIR="input" INPUT_FILE="orca.in" OUTPUT_DIR="output" OUTPUT_FILE="OUTPUT" # Create a temporary directory mkdir -p ${TMPDIR} # Copy the input data to the directory pointed to by the $TMPDIR variable cp ${SLURM_SUBMIT_DIR}/${INPUT_DIR}/* ${TMPDIR} # Go to the $TMPDIR directory cd $TMPDIR # We do the calculations orca ${INPUT_FILE} > ${OUTPUT_FILE} # Footer cat << EOF -------------------------------------------------- --------------- End of calculations [$(date)]. -------------------------------------------------- --------------- EOF # We finish the calculations, copy the contents of the $TMPDIR/output directory # to the directory from which the job was queued. mkdir $SLURM_SUBMIT_DIR/${OUTPUT_DIR} cp -r $TMPDIR/* $SLURM_SUBMIT_DIR/${OUTPUT_DIR}/ # Clear working directory rm -rf $TMPDIR
A sample data file to be placed in the input directory:
orca.in
! B3LYP def2-SVP Opt
# My first ORCA calculation
*xyz 0 1
O 0.000000000 0.000000000 0.000000000
H 0.000000000 0.759337000 0.596043000
H 0.000000000 -0.759337000 0.596043000
*